It does? I always have issues with it when I have a fresh Windower install until I re-enable MMF support on keyboard. Probably something else I change then :D
I typically use it when I have another window open though, so that could be what I was thinking of.
Before I figured that stuff out I would not be able to properly play the game without a gamepad (I am still addicted to the gamepad, though)... lol
Windower adds a lot of new complexity to the game interface though.
Also keep in mind that when you have the game set into the compact keyboard mode it works COMPLETELY differently. :)
Compact keyboard mode exists only to make it possible for one to play the game with a laptop computer which has no numeric keypad.
It's slightly clumsy but works well once a person gets the hang of it. I never used it so I don't know all the details about how it work, sadly. So the stuff you said about Windower + FFXI might still apply on some setups.